diff -r 6fe1936ac50b src/render/opengl/SDL_render_gl.c
--- a/src/render/opengl/SDL_render_gl.c Thu Jun 05 11:55:37 2014 -0300
+++ b/src/render/opengl/SDL_render_gl.c Sun Apr 26 17:03:27 2015 +0200
@@ -1046,7 +1046,11 @@
     if (renderer->clipping_enabled) {
         const SDL_Rect *rect = &renderer->clip_rect;
         data->glEnable(GL_SCISSOR_TEST);
-        data->glScissor(rect->x, renderer->viewport.h - rect->y - rect->h, rect->w, rect->h);
+        if (renderer->target) {
+            data->glScissor(rect->x, rect->y, rect->w, rect->h);
+        } else {
+            data->glScissor(rect->x, renderer->viewport.h - rect->y - rect->h, rect->w, rect->h);
+        }
     } else {
         data->glDisable(GL_SCISSOR_TEST);
     }
diff -r 6fe1936ac50b src/render/opengles/SDL_render_gles.c
--- a/src/render/opengles/SDL_render_gles.c     Thu Jun 05 11:55:37 2014 -0300
+++ b/src/render/opengles/SDL_render_gles.c     Sun Apr 26 17:03:27 2015 +0200
@@ -709,7 +709,11 @@
     if (renderer->clipping_enabled) {
         const SDL_Rect *rect = &renderer->clip_rect;
         data->glEnable(GL_SCISSOR_TEST);
-        data->glScissor(rect->x, renderer->viewport.h - rect->y - rect->h, rect->w, rect->h);
+        if (renderer->target) {
+            data->glScissor(rect->x, rect->y, rect->w, rect->h);
+        } else {
+            data->glScissor(rect->x, renderer->viewport.h - rect->y - rect->h, rect->w, rect->h);
+        }
     } else {
         data->glDisable(GL_SCISSOR_TEST);
     }
diff -r 6fe1936ac50b src/render/opengles2/SDL_render_gles2.c
--- a/src/render/opengles2/SDL_render_gles2.c   Thu Jun 05 11:55:37 2014 -0300
+++ b/src/render/opengles2/SDL_render_gles2.c   Sun Apr 26 17:03:27 2015 +0200
@@ -408,7 +408,11 @@
     if (renderer->clipping_enabled) {
         const SDL_Rect *rect = &renderer->clip_rect;
         data->glEnable(GL_SCISSOR_TEST);
-        data->glScissor(rect->x, renderer->viewport.h - rect->y - rect->h, rect->w, rect->h);
+        if (renderer->target) {
+            data->glScissor(rect->x, rect->y, rect->w, rect->h);
+        } else {
+            data->glScissor(rect->x, renderer->viewport.h - rect->y - rect->h, rect->w, rect->h);
+        }
     } else {
         data->glDisable(GL_SCISSOR_TEST);
     }